Ishrub: "The longer eye to eye shock length versions, 12.5" or 13" with Standard or Heavy Duty rates are BOTH likely to provide a MUCH more compliant and comfortable ride than short 11.5" or 12" eye to eye length shock with the Standard spring rates required to provide support over a MUCH shorter available spring travel."
All the Progressive shocks for the R3 have the same travel or stroke length. Therefore, the spring travel is the same. The different lengths only affect ride height. They can be more compliant because the damping is likely very different than the stock shock. The Classic R3 has 12.5 center to center eye length, same as a standard. I would suggest heavier springs only if you are bottoming out with your current springs. My wife and I with luggage go over 400lbs and we rarely bottom out with 260 lb/in springs. We do bottom out with 150 lb/in.