Glad to see you are back to posting on this project. Space is an issue as you have discovered. Therefore, twenty inch runner lengths may be difficult to accomplish without tight bends. However, you likely won't need that length. The chart you listed shows timing and resultant harmonics from valve event to valve event. What do you think happens while the intake valve is open? For one, the moving piston creates a continuously variable length and volume for that runner. Two, resonances from the exhaust system propagate all the way to the bell mouth of the runner during overlap. Third, resonances in the chamber connecting the runners has persistence, so they impact each intake runner. Four, throttle blade position affects density and runner velocity so depending on its position the resonances change. There are more but you get the idea. So while the chart is accurate, it is only about a third of the story. The pulsing in the intake system is very complicated and hard to predict.
Try to improve air flow by keeping things smooth and fairly straight; keep a taper in the system from bell mouth opening to valve throat which with printed stacks is easier to do; capture as much energy in the plenum as you can without sacrificing top end flow as it will add amplitude to the signal when in harmony with a runner resonance. Placement of the filter does impact how the plenum resonates but that impact varies from one type filter to another with resistance to airflow the variable. Which is why my system has the air filter at entry. My Thunderbird on the other hand has an internal filter.
With the high strength printing available now, consider printing new boots to connect the TB to the head. (An internal large cross section o'ring can seal the connection to the TB;s and one in the flange face seals to the head. A support structure and retainer completes the task. Doable as I have done it on a Daytona but using aluminum.) You might be able to move the TB rail out and point it upwards giving you more room.
Then when you think you have an ideal system, start working on internal plenum baffles. Tis quite an eye opener to see the impact they can have.
Caveat here, nothing works better than straight, correctly tapered and sized individual runners to make the most power at one rpm. So, if peak hp is your goal don't waste your time on developing alternate intake systems. If you want to fill holes in a torque curve or fatten it up or spread it out over a range of throttle positions and rpm's, you are headed in the right direction.