There would be no difference whether Penner or your dyno shop modified a stock map.
If you look in the map libraries that you can access from the Tuneecu app or on Tuneecu.net, you only see tunes for bikes with vins ending in 961597 to AV5456 (GT model) and also including and above AV5457. So far, Alain has not provided an upper vin cutoff beyond which maps cannot be safely loaded into new bikes. All of the Penner maps are based on the older vin range. Has anyone tried copying the tables from a Penner map into the base map for the newer vins (AV5457 and up)? On the other hand, the problem might be deeper in the software which is something Alain will need to address.