In case anyone was wondering why this is complicated, and the cam sensor issue being solved is so awesome.
To fire in sequential the ECU needs to know two things, where the crank is in its rotation, and whether the #1 piston is at TDC on intake stroke or TDC on compression stroke. The crank sensor tackles crank position, cam sensor tackles which TDC in relation to the cams.
To run on wasted spark, the engine design must have opposing pairs of cylinders to fire the spark into 360 degrees from each other. In this way, 1 cylinder is firing when you want it to initiate the power stroke, and the 360 out cylinder fires at the same time, but it's at the very end of the exhaust stroke, this the name, wasted spark.
You cannot run wasted spark on an engine where the cylinders are seperated by 120 degrees, as our engines are. We don't have a cam sensor, so at first glance the only option is add a cam sensor. This solves that with no engine modifications, a much more elegant solution.
My Autotune, POD-300, and QS will be up for sale after RAA West in Leakey, going to make the jump this winter to the MS3X.