I know I'm exhuming an ancient thread here, but since everyone here seemed to agree that eliminating the secondaries (by removing them physically or via the ECU with Tuneboy/Tuneecu) is a no-brainer performance mod, it was one of the first things I did when I got my '06 Classic a year and a half ago. The bike had D&Ds on it and, once I installed a suitable tune (I believe it was 20050), the bike had the awesome power you guys all know about, easily lifting the front end (a time or two unintentionally with the wife on the back-she wasn't too thrilled) and smoking the 240 at will. This was all with just an underseat K&N (ductwork on bottom of seat removed) for the intake. It was, however, way too loud for me so I opted to sell the D&Ds and reinstall the stock mufflers along with a cat-bypass and proper tune. This was also much more suited to the RV campgrounds we stayed at throughout this past summer. Using TuneECU I've switched a time or two between enabling and disabling the secondaries, and what I've found is that (and this is only a seat of the pants observation) with the secondaries enabled, the beast seems to have more torque in the first 3 gears at the lower rpms I usually ride in (2 to 3.5k, especially when 2-up). Is this actually true? I plan on keeping the current set up, not going with triple K&Ns or high performance (and noise) pipes, and aren't looking for best quarter mile times. Oh, and I also like the additional engine braking with the secondaries enabled. Any input is, as always, appreciated.
Vin