Britman,
The idle stepper motor can cause this problem too. I have mine backed off all the way so it doesn't do anything. You can hear it for a few seconds before starting the bike and then it quits.
In fact, when I tried to adjust it out yesterday, after loading my new tune, it started doing the same thing. My idle speed started sticking at about 2,000 RPM. So I backed it back off, and we're all good.
The trade off is.. it has to warm up for a minute or two before it idles just right. It still idles good though, just kind of like if you had to have the choke on for a bit on a carbed bike.