Just wait until you get it sorted out and try a Bridgestone Exedra Max on the rear with the Avon front its amazing especially the longer rear tire mileage.
The noise you say your bike is making sounds like it may have a rod problem on the big end. But since your under warranty your limited as to what you can do and not void the warranty. Otherwise I would suggest pulling the lower sump pan for inspection. you can even check the big rod ends from there if you want. In order to do this you will have to pull the 8 main ladder bearing bolts to remove it and the oil baffle on the crank. Below is a picture of the main bearing ladder I was referring to. note the 8 bolts Main ladder bolts that go completely thru to the upper block. the eight main ladder bolts (large ones) and the three oil tube line bolts you have to remove and can be done while the engine is in the bike. are circled in red.
below is a picture with the ladder and oil baffle removed so you can see the rods (big end)
but the pan is a good indicator as to where your losing metal and how bad. Things like the output drive bearings can be inspected this way because when they go you will see the parts of the cage right below the bearing s in the sump pan. You can inspect the rod one at at time while the engine is together but the rod bolts are stretch bolts (waste bolts) and should be replaced every time. Note you are not releasing the timing between the crank and the cam so once you put her back together she should run just fine. Also you will be amazed at the swarf that is caught in the screens already most of which are from manufacturing of the engine as you never can get it all clean out. Personally If I bought a new Roadster it would be done right when I did my 500 mile oil change over to synthetic and probably again at the 5000 mile change. I have had mine off 5 times now and have not changed the gasket except for the first time.
Hope this helps any other question feel free to ask away.
Tomorrow I will be on a 800 mile ride to pick up my retirement present to myself so I might not be on the sites for s day or two except at the motels.