Well, no solution yet. Problem is getting worse-changed the plugs, checked all vacuum lines and verified balance on the TBs, all looked good. Bike has about 24k on it now.
So-cold start, won't start without holding the throttle part way open. When it does fire it feels like it runs on 2 cyls for maybe 15-20 seconds, then all is good. Though it does seem to be getting worse/taking longer to settle down.
Latest issue-if I have to stop at a long stop light (or 2-3 consecutive ones) the engine seems to "load up" and start stumbling at idle, and if left w/o opening the throttle will eventually stall. This obviously when warm, not just a cold start problem any more. At speed all is fine, though fuel economy is down. I'm starting to think injector problem loading a cylinder with fuel-either sticking or leaky o-ring. That would explain why it's hard to start after sitting, as well as possibly "flooding" a cylinder if it's leaking fuel with insufficient air.
Also have noted "paint can rattle" when cold, which goes away when warm. I've tried the "put it in high and bump the motor back and forth" routine several times, to no avail. Not sure if any of these are related. Stepper motor linkage cleaned and lubed, cleaned the intake air temp sensor, checked contacts on coils, most of the obvious stuff.
Think I'll give the dealer a crack at it.