I work for Harley as a dyno tech in research and engineering. It’s an amazingly complex task to design a compliant vehicle that works. Beyond making a fun, safe, reliable vehicle, it must also meet regulatory laws for a variety of things like noise, emissions, lighting, electrical interference, in some countries max power, fuel economy......and on and on!
The end product is a compromise. Changing things doesn’t necessarily make anything bad, unless poorly executed. It might not be legal, adding fueling and a better flowing exhaust makes motors happy. It also increases tailpipe emissions! Can’t have it all!