No the ecu has noting to learn from the ignition except oh power is on
I have never been under the Touring. but since they were messing up front near the # 1 hard to get coil they might have accidentally disturbed the leads. Which vibrate and get loose over time. Maybe you can get at # 2 and # 3 if it is on the right side like the Rocket. Check them first just pull clean and squeeze a bit with the needle nose pliers so they are tight going back on. And some dielectric grease before assembly. If you get a improvement you on the right track. The if it is still there you know you have to wrestle to get to the #1 coil.
here is a picture of the right side with the coils on the Rocket in case it will help.
You can see both make note of your wire colors in case they are different. After that do you have tune boy or tune ecu?