Crazy ignition skip under load

I too have this momentary cut out on my 2006 Rocket. I did a major up grade at 50,000 miles adding the NLR 200 HP kit along with Viking Exhaust. New everything including fuel filter. Ran great for many miles. Now at 56,000 miles the exact scenario has developed in mine too. I first thought it was a transmission or clutch slip. But it is just as Frosty describes. I don't think it is clutch. I'm scared it could be a final drive spline jump.
I i would say there is nothing in the final drive that would slip once the shaft strips you are walking same with ujoints
 
I have been chasing this gremlin for awhile, no not the car, bike starts and runs fine, but when I put the engine under load, (hard throttle to put a Vrod or other Harley back in its place) the cuts out for a fraction of a second, and it will do it multiple times, but doesn't seem to happen in the gears like 4th and 5th, but its harder to get the engine under load at those speeds. so far I have done,

- battery is good, no power issues
- The bike has RamAir, and full Jardine exhaust with CAT delete installed
- Using Hanso tune for this setup, I have been using this tune for about 8-years with no issues, it actually gave me 130HP and 140Tq at the back wheel.
- TPS has been changed and it setup correctly, as well as the other sensor, don't remember the name of it Secondary sensor maybe? the one at the front of the throttle bodies.
- Vacuum hoses on the throttle bodies are good, no cracks or leaks
- Throttle bodies have been synced
- Scorpio alarm system has been completely removed, just because it was driving me nuts
- Auto Tune and Power Commander V was all removed, figured it was possible that they might be throwing some bad values.
- Connectors on the coils have been crimped and are tight
- Spark plug leads have been changed (they were new, but came from one of the early engine kits that dealers would get, waaaaaay back, so they were about 15 -20 years old when I got them)
- New spark plugs, and the gap was checked and set correctly on all of them
- Valve clearances were checked and any that were out were fixed, Cam chain and guides were replaced at the same time.
- the SEC I think it is has been disabled through Tune ECU
- Reinstalled the Hanso tune, and ran the 12-minute adaptation (original tune is no good to use due to the intake and exhaust mods)
- On deceleration there will be back firing, I think it is more than usual, and the exhaust connection joints have been tightened and sealed, pull the clutch in and the back firing stops.

I thought it might have something to do with timing being off, but that would be consistent and noticeable through all the gears and at start up, and the bike starts, idles, and runs fine if you don't push it. The other thought is that possibly the spark plugs leads or just one of them had degraded due to how long they sat, got them and a ton of other new parts from Triple Trouble, but not sure how they were stored through all that time. Possibly I have coil that is finally saying enough is enough and I'm not putting up with your crap anymore, but it if is one lead or coil I'm not sure how to track down which one, and it is about $1000 to replace the 3 coils and six leads all at once, but I may end up doing that anyway.

I have gone through a number of threads, but can't find something that falls along this line of trouble, so I'm looking for further clues, or something I might have missed or not thought of. I have the GT to play with, but it is nice to tear around on the Touring once in awhile I miss riding it running correctly, it does incredible burn outs. I have been leaning toward leads or coil, since on a few of my cars if one of those was bad, it was run fine if you were driving normal, but when you stepped on the gas to get up and go, you would get a miss in the engine just like on the bike.
Change the fuel filter, less load in the lower gears and also less advance unless that has been changed.
 
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