Yes, likely the headstock bearing. That said, eliminate the easy fix first. You said the tire was fine, but does that include proper air pressure? My R3T did this within 24 hours of getting the bike. I automatically suspected the headstock bearing, but decided to check the air pressure for kicks and grins even though I really didn't think that would be the issue. Well, it was. The front tire was off by 8 lbs. Inflated it to proper pressure and shaking went a way. I called the dealer the next day and let them know about that and a few other items missed on the PDC.
FTR, the poor PDC prior to delivering my R3T was the only bad experience I've ever had with our dealer. It was straightened out, however, and all is good.