What brake upgrade are you planning?
We are going to try out something called TCB Traction Control Braking System. It is not ABS, but it does simulate the feathering of the brakes so your back tire doesn't lock up. A bunch of us So. Cal Capt's met up last Sunday, and we were talking about this issue. I thought it was indicative of the R3T, but it seems that everyone at the table has the same problem.
Karl Krothenberg and I are going to put the system on our bikes and try them out. We will take pictures and post the process if we think that it is worth it to the rest of the group.
I am going to give Karl all of the credit, he is the one that tracked it down... I just jumped at the opportunity, and said that we could use my house to work on them.