Before work tomorrow (I hate working 12s hour 3rd shifts) I am going to clamp my dial indicator on the swingarm and spin the wheel to see how bad the rim lip is out. The rotor looked like a 1/8th of a inch or better
clearly something was wrong. It really bothers me that the lip where the bearing installs on the rotor side seemed to have a wobble too. Almost like the rotor side bearing had a egg like rotation. When I looked at the lip of the wheel it didn't seem to have much of a "wobble" but it was hard to guage it without a refrence point. Between the shock and the rotor it was very clear there was a changing of clearance as the wheel spun.
I am suprized the rotor is warped, but that could explain a lot since the factory pads I removed seemed to half half the life left so it was unlikely they were causing the noise I heard before the new tires/pads. I just hope its not a messed up wheel since I can't seem to find any used for the roadster (with the ABS ring hookup).