The standard TTS supercharger kit places the stock IAT sensor upstream of the supercharger... between air filter and SC intake. IMO this was done by TTS to keep the super hot compressed air from maxing out the IAT sensor. I've been monitoring the temps of the compressed air exiting the intercooler, and IMO it's within IAT operational limits. (Good job on intercooler efficency, Richard!)
I'll be moving the IAT sensor to the manifold just upstream of the throttle bodies, where it can actually function as designed... compensating for air charge density due to temperature. Of course, this means re-mapping the bike, but it all comes with the lunch, right?