Phil I am not sure what you are referring to about removing the secondary Throttle Position Sensor (TPS) which I am not aware of anyone physically removing.
There are several schemes, (Tune boy, GIPRO the resistor mod) all trying to address the problem of the 7% (or maybe 10% or 15% depending on who you talk to) reduction in power in first gear.
The reduction in power is a result of the combined effects of the fuel map, the degree of ignition advance and the percent that the secondary throttle plates are not opening.
Removing them completely only address part of the problem, but it does so in a way, when combined with Tune boy etc, that is more obvious to your 'butt' dyno. Still, I don't recommend it, as I BELIEVE, (this is my opinion) that the plates removed makes the engine a VERY small amount more likely to stall in some conditions. I don't BELIEVE it makes it significantly faster, (but your BUTT dyno will like it).
And always remember, ... I have been wrong before.
I have the predator exhaust, Triple K&N's, Tune Boy and I have the secondary plates removed. All of them that is except the small piece of the one screw I broke off!