Well, the new tune didn't change anything, which now that I think about it, I encountered this problem after a new tune from Hans.O that went from too rich to slightly leaner. Being that the tune was made leaner when the problem presented itself, I doubt the problem is that the tune is too rich.
That being said, I had my doubts that the tune would be the source of the problem as I wouldn't imagine it would trigger the neutral light.
Here is a short clip I just recorded. I did a quick acceleration 3 times, each time in 2nd gear. You can hear when the acceleration falls off, as during acceleration the engine suddenly revs up. Now that I am trying to deliberately recreate the issue, I got it to trigger as low as about 40-45mph in 2nd gear.
Not sure if the video is helpful at all, but here it is.