Gears not engaging, after being rough with the gear shifter.

I was also preparing to make a stand for the engine, but when the time came, I just turned it over and fastened it. I'm not the only one. And yes, it's safe.
I have a dolly, a 2x4 and some straps. That should do the trick. Any tips for covering all the holes, etc?
 


The good news is that my miles-to-fill indicator, fuel level bar, gear indicator, neutral light, and the sidestand sensor (the one that kills the bike) all suddenly started working again. Before this issue, none of those were functioning.

when I start the bike, it feels like it wants to move forward as soon as I release the clutch — almost like it’s stuck in 1st or 2nd gear. No rattling or grinding noises when I started the bike , the single clank and loud rattling noise when heard when the issue first showed up while cruising at about 60 mph.

I’ve already ordered a new gasket, RTV silicone, and crankcase bolts, and I’ll be picking up the 32x1.5 thread puller that @oteczdmitriy recommended.

Does this sound like something minor (maybe something slipped/loose inside) or am I looking at a bigger teardown? Any pointers before I crack it open would be hugely appreciated.
 
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Get ready for bad news, if something is loose, it's going to cause trouble. After hearing the creaking sound, many people wanted to find the stray mouse and simply let it go...
 
pan meaning to the flat cover filled with oil and debris? btw I find a small leak on the front of the engine, but I don't know how to difference if its coolant or oil
put it on a small strip of card board and put a match to it oil burns and coolant will pop a little but will not burn.
 
Get ready for bad news, if something is loose, it's going to cause trouble. After hearing the creaking sound, many people wanted to find the stray mouse and simply let it go...
that is fine, today started my first week of vacation and I am already getting bored. its going to be my first real work on the bike, so happy to learn honestly.