It could all just be in my head .... I didn't have the bike for two weeks, maybe I just forgot how it sounded.
Here's how it sounds ...... you know how you can "almost" hear the three cylinders firing?
Well, it's like one of those three sounds weaker than the other two. Hence the idea that maybe one of them has only one plug firing. It comes off idle and accelerates just fine, in fact if you just crack the throttle a little, every thing smooths out and sounds fine.
I think I'll start with pulling the plugs just to check on them, R3's have such a powerful spark .... **** thing jumps over an inch gap. With that mean of a spark, it would about have to be jumping to ground somewhere to not be lighting the fire down below.