I spoke to the head wrench at the Triumph dealership about my custom tune when I cautioned him not to change it during the 30K service. Verifying the correct/up to date tune is part of the service. He acknowledged the slightly lean issue with the Triumph TOR tune and liked the way mine ran with the tune I'd installed. He said they had more issues with bolt on tuners such as the Power Commander (don't know why) than with programs like Tuneboy. He was not familiar with the TuneECU.
And on the 12 minute tune, I recently had the service manager at my Kawasaki/KTM/Victory dealership remind me that whenever doing one, to disconnect the positive terminal first for a few minutes for to allow the ECU to reset itself. Then when the bike is started the ECU "looks" for changes in the mixture/exhaust etc., to adapt itself. That's what the "wandering" RPMs is all about. I'd forgotten about that step and was going to do one on my Vulcan Nomad if I installed an aftermarket exhaust.