The Response I received was to call their Tech line.
I called their "tech" line and spoke with someone who really didn't sound awake, nor as knowledgeable as I would have preferred. Regardless he gave the following answers, which more or less make sense:
The baseline tune that all their downloadable ones is based upon the factory United States tune. For that I was led to believe that it was for a bike with the empty cat box and factory silencers.
And to that, with my 20055 tune (cat delete), means I am running grossly rich as I partially guessed, but was further mentioned on this site.
The Rocket was tuned in their facility in Las Vegas, which is more or less a high temperature low humidity environment that is 2000 feet above sea level. Temperature swings vary greatly 50-100 degrees over the year (75F and 25% humidity today).
According to the "ONE," the Rocket will still be able to adjust for air temps and atmospheric changes.
He also stated that if the PC is compensating for a factory lean condition, their will be a reduction in fuel mileage.
Regardless, I'm getting it dyno tuned Friday since this is getting ridiculous.
For the rest, depending on mods, this explains some of our questions...