You are now giving the MAP sensor a better signal when engine/compression braking. This causes the idle air control servo on the primary thottle shaft to react a bit differently.
FWIW, some ECUs are now using the IASC/ISCV servo to reduce engine braking under decel. By keeping the throttle open a bit more under decel, the compression braking is reduced. Triumph uses this on the later D675 engines to keep from using a slipper clutch. And I have used this approach on some road race bikes and cars using aftermarket engine management. A simple solution in my opinion.