Hi Neil, You'll have running problems with the clutch switch removed and permanently looped out. The Engine Management has different mapping for differing gears compared to neutral. It will always stay in the neutral map if you bypass the clutch switch. If you put the bike on a stand / raise the rear wheel with the engine running and put in say second gear, the engine map does not change then, as you start to release the clutch lever slowly the wheel will start to turn and when the lever is past where the clutch switch goes open circuit, you will hear the engine map change in the running of the engine.
Edit: I now re-read your post and I am not sure if you want to remove it for replacement or bypass it totally?