If your do not have the software you can always go to a auto parts store and have them read the code for you. I am not sure if they could clear them but it could point you in the right direction. Once you correct the problem the engine light on some of the problems will go out after so many cycles as Ian stated above.
Also I would take a look at the coil leads Low tension as Ian stated start with the two easy ones hopefully they are the culprit. Picture below shows the two low tension leads on the number 2 coil. Brown and Green. The number three coil is right behind it. Number 1 is up front under the heck and suck to get at. If you do look at leaving the plate off the top of it as it is there just to anchor harness connectors. This will really suck if you have the original intake plumbing so start with number 2 & 3 first.