The biggest problem your going to find is nobody in the whole state seems to have heard of TUNE ECU or Tuneboy. The only r3 that was modified that I ever saw around in milwaukee was a guy who bought it already dynotuned from some shop in chicago. You do have the option of a PCv controller that plugs between the ECU and the injectors, it has a standalone mapping program that most bike dyno shops are familiar with, and will be able to tune.
There are maps already out there for a similar setup to what you will have, provided you go with a different filter setup. For the price of a cable (20$) you can download the tune yourself and see how it goes. The Rockets EFI is about on the level of a 80s car. Stray a bit from stock and the bike will run lean, it wont really correct the fueling itself. There is no such thing as a off the shelf tune thats perfect, every bike will be slightly different and its best to actually put the bike on a dyno and tune it there to start. However I think you will find tunes that will get you close to where you want to be.