Tuning is not fast, nor easy. A quickie tune is likely only done at WOT, neglecting the load and throttle where the bike spends most of its time. There is a good deal of difference in a quick tune, and a full on mapping job.
It is good to see you spending the time to fully map your forced inducted
R3 on an eddy current brake... the results will be worth the effort. Your bike has ventured far from stock, and the stock tuning was not perfect. However, don't expect the final results to be "perfect" at low throttle positions on the road. On the road, the bike is loaded a bit differently than on a dyno - eddy current or especially inertial types.
Later, a couple of hours spent with a wide band UEGO with logging on the road, and the bike will be even better.
Learning a few in's and out's of tuning is always time well spent (and generally a lot of fun). You are well on the road to
knowhere.